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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.13

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-02-04, 21:11 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn


        General Statistics

        Showing 3/3 rows.
        Sample Name# Variants
        multiqc
        0
        multiqc_general_stats
        0
        multiqc_sources
        0

        Fqscrn

        MultiQC Report

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              If you use plots from MultiQC in a publication or presentation, please cite:

              MultiQC: Summarize analysis results for multiple tools and samples in a single report
              Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
              Bioinformatics (2016)
              doi: 10.1093/bioinformatics/btw354
              PMID: 27312411

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              Tool Citations

              Please remember to cite the tools that you use in your analysis.

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              About MultiQC

              This report was generated using MultiQC, version 1.13

              You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

              For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

              You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

              MultiQC is published in Bioinformatics:

              MultiQC: Summarize analysis results for multiple tools and samples in a single report
              Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
              Bioinformatics (2016)
              doi: 10.1093/bioinformatics/btw354
              PMID: 27312411

              A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

              Report generated on 2023-02-03, 22:43 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn


              General Statistics

              Showing 3/3 rows.
              Sample Name# Variants
              multiqc
              0
              multiqc_general_stats
              0
              multiqc_sources
              0

              Fqscrn

              MultiQC Report

              Loading report..

              Highlight Samples

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                    Note that additional data was saved in fqscrn_mqc_data when this report was generated.


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                    If you use plots from MultiQC in a publication or presentation, please cite:

                    MultiQC: Summarize analysis results for multiple tools and samples in a single report
                    Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
                    Bioinformatics (2016)
                    doi: 10.1093/bioinformatics/btw354
                    PMID: 27312411

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                    Tool Citations

                    Please remember to cite the tools that you use in your analysis.

                    To help with this, you can download publication details of the tools mentioned in this report:

                    About MultiQC

                    This report was generated using MultiQC, version 1.13

                    You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

                    For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

                    You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

                    MultiQC is published in Bioinformatics:

                    MultiQC: Summarize analysis results for multiple tools and samples in a single report
                    Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
                    Bioinformatics (2016)
                    doi: 10.1093/bioinformatics/btw354
                    PMID: 27312411

                    A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

                    Report generated on 2023-02-02, 17:03 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn


                    General Statistics

                    Showing 1/1 rows.
                    Sample Name# Variants
                    multiqc
                    0

                    Fqscrn

                    MultiQC Report

                    Loading report..

                    Highlight Samples

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                      Rename Samples

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                      Paste two columns of a tab-delimited table here (eg. from Excel).

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                          Export Plots

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                          Download the raw data used to create the plots in this report below:

                          Note that additional data was saved in fqscrn_mqc_data when this report was generated.


                          Choose Plots

                          If you use plots from MultiQC in a publication or presentation, please cite:

                          MultiQC: Summarize analysis results for multiple tools and samples in a single report
                          Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
                          Bioinformatics (2016)
                          doi: 10.1093/bioinformatics/btw354
                          PMID: 27312411

                          Save Settings

                          You can save the toolbox settings for this report to the browser.


                          Load Settings

                          Choose a saved report profile from the dropdown box below:

                          Tool Citations

                          Please remember to cite the tools that you use in your analysis.

                          To help with this, you can download publication details of the tools mentioned in this report:

                          About MultiQC

                          This report was generated using MultiQC, version 1.13

                          You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

                          For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

                          You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

                          MultiQC is published in Bioinformatics:

                          MultiQC: Summarize analysis results for multiple tools and samples in a single report
                          Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
                          Bioinformatics (2016)
                          doi: 10.1093/bioinformatics/btw354
                          PMID: 27312411

                          A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

                          Report generated on 2023-01-30, 23:18 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn


                          FastQ Screen

                          FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.

                          Mapped Reads


                          Snippy

                          Snippy is used for rapid haploid variant calling and core genome alignment.

                          Snippy Variants

                          This plot shows the different variant types reported by snippy.

                          Error - was not able to plot data.


                          FastQ Screen

                          FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.

                          Mapped Reads

                          loading..

                          Snippy

                          Snippy is used for rapid haploid variant calling and core genome alignment.

                          Snippy Variants

                          This plot shows the different variant types reported by snippy.

                          Error - was not able to plot data.


                          FastQ Screen

                          FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.

                          Mapped Reads

                          loading..

                          Snippy

                          Snippy is used for rapid haploid variant calling and core genome alignment.

                          Snippy Variants

                          This plot shows the different variant types reported by snippy.

                          Error - was not able to plot data.


                          FastQ Screen

                          FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.

                          Mapped Reads

                          loading..