A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-04, 21:11 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 3/3 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
| multiqc_general_stats | 0 |
| multiqc_sources | 0 |
Fqscrn
v1.13
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Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-03, 22:43 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 3/3 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
| multiqc_general_stats | 0 |
| multiqc_sources | 0 |
Fqscrn
v1.13
Loading report..
Highlight Samples
Regex mode off
Rename Samples
Paste two columns of a tab-delimited table here (eg. from Excel).
First column should be the old name, second column the new name.
Regex mode off
Show / Hide Samples
Regex mode off
Export Plots
Save Settings
You can save the toolbox settings for this report to the browser.
Load Settings
Choose a saved report profile from the dropdown box below:
Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-02, 17:03 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 1/1 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
Fqscrn
v1.13
Loading report..
Highlight Samples
Regex mode off
Rename Samples
Paste two columns of a tab-delimited table here (eg. from Excel).
First column should be the old name, second column the new name.
Regex mode off
Show / Hide Samples
Regex mode off
Export Plots
Save Settings
You can save the toolbox settings for this report to the browser.
Load Settings
Choose a saved report profile from the dropdown box below:
Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-01-30, 23:18 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.