A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-04, 21:11 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 3/3 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
| multiqc_general_stats | 0 |
| multiqc_sources | 0 |
Fqscrn
v1.13
Loading report..
Highlight Samples
Regex mode off
Rename Samples
Paste two columns of a tab-delimited table here (eg. from Excel).
First column should be the old name, second column the new name.
Regex mode off
Show / Hide Samples
Regex mode off
Export Plots
Save Settings
You can save the toolbox settings for this report to the browser.
Load Settings
Choose a saved report profile from the dropdown box below:
Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-03, 22:43 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 3/3 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
| multiqc_general_stats | 0 |
| multiqc_sources | 0 |
Fqscrn
v1.13
Loading report..
Highlight Samples
Regex mode off
Rename Samples
Paste two columns of a tab-delimited table here (eg. from Excel).
First column should be the old name, second column the new name.
Regex mode off
Show / Hide Samples
Regex mode off
Export Plots
Save Settings
You can save the toolbox settings for this report to the browser.
Load Settings
Choose a saved report profile from the dropdown box below:
Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-02-02, 17:03 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
General Statistics
Showing 1/1 rows.| Sample Name | # Variants |
|---|---|
| multiqc | 0 |
Fqscrn
v1.13
Loading report..
Highlight Samples
Regex mode off
Rename Samples
Paste two columns of a tab-delimited table here (eg. from Excel).
First column should be the old name, second column the new name.
Regex mode off
Show / Hide Samples
Regex mode off
Export Plots
Save Settings
You can save the toolbox settings for this report to the browser.
Load Settings
Choose a saved report profile from the dropdown box below:
Tool Citations
Please remember to cite the tools that you use in your analysis.
To help with this, you can download publication details of the tools mentioned in this report:
About MultiQC
This report was generated using MultiQC, version 1.13
You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0
For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info
You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC
MultiQC is published in Bioinformatics:
MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-01-30, 23:18 EST
based on data in:
/home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2_fqscrn
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
MultiQC v1.13
- Written by Phil Ewels,
available on GitHub.
This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
MultiQC v1.13
- Written by Phil Ewels,
available on GitHub.
This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.
Mapped Reads
MultiQC v1.13
- Written by Phil Ewels,
available on GitHub.
This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.
Snippy
Snippy is used for rapid haploid variant calling and core genome alignment.
Snippy Variants
This plot shows the different variant types reported by snippy.
Error - was not able to plot data.
FastQ Screen
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.DOI: 10.12688/f1000research.15931.2.